FunctionRegions: Batch query of putative functional human genomic regions

Search for conserved genomic regions, CpG islands, and transcription factors binding site clusters in human genome.  They would be the primary interesting regions to look for functional variants.

Based on

UCSC Genome Browser's latest map data, Conservation Track, CpG islands, Conserved Transcription Factors Binging Sites.

Hu/Chimp/Mouse/Rat/Dog/Chick/Fugu/Zfish Multiz Alignments & PhyloHMM

Based on downloaded data file: multiz8way

1. Please copy & paste interesting genomic regions list  (one region per line, tab-delimited, including chromosome, start, end position and cutoff phylo-HMM conservation scores.  Positions on the latest Genome Browser Map) Sample input

or upload data file

2. Choice of outputs:

3. Please specify the email address where the results can be delivered:

Email address  

4. Output in gzip compressed format:

Your email box accepts message size limit of  per message

If your input data file is from a Mac machine, please be sure to check this box

 

 

 

 

Authors: Chunyu Liu