Batch query for SNPs in a genomic region

SNPQuery-Position: Batch query of SNPs in genomic regions

Search for SNP map positions, functional effects, associated diseases, allele frequency (flanking sequences, HapMap data?)

Based on

UCSC Genome Browser's latest map data.
NCBI's dbSNP data (Human data only)

Therefore, only NCBI SNPs mapped to human genome can be found here.

SNPs mapped to multiple locations will be excluded from the outputs automatically.

Input: list of genomic regions.

The genomic DNA region position can be obtained from NCBI Map Viewer or Genome Browser by searching for marker or gene positions.
Be sure to use the latest version data, as we will only present data for the latest version for query here.

1. Please give the genomic DNA regions list (in specified format), Be sure to use different regionNames for the different query regions.

or upload data file

Add Kb extra sequence at both ends of all the genomic regions

2. Use as primary map (dbSNP has more mapped SNPs than UCSC map). Only SNPs mapped to this primary map will be collected.

3. Choice of outputs:

Query results (against UCSC map)
Query results (against dbSNP)
Query results (merged data of above)

4. Please specify the email address where the results can be delivered:

Email address

4. Output in gzip compressed format:

Your email box accepts message size limit of per message

If your input data file is from a Mac machine, please be sure to check this box

Authors: Chunyu Liu, Tu Nguyen