Extract sequence fragments according to feature table

(Currently, only one "master gDNA sequence" can be processed: all entries in the corresponding feature table can be analyzed)

 

1. Please give feature table file in the right format (containing all the features):

2. Please give the master sequence data file in FASTA format:

3. Add extra bases to the feature sequence fragments at both ends

4. If the feature is shorter than 40 bp, 40 bp flanking sequence be added in at both ends. (SNP will automatically add 200 bp at both ends.)

5. Output name you prefer (The file name should not contain white space. It should be only composed of numbers, letters a to Z, "-" and "_" .)

6. Optional output format of SNPs (ONLY FOR SNPs), which can be used as inputs for other tools supplied in this website, including primer design tools.

    Optional output of DNannotator format of SNPs
    FASTA format with square bracket quoting alleles for SNPs

7. The extracted FASTA format sequence in one file will be delivered to:

Email address

choice of output in gzip compressed format:

Your email box accepts message size limit of  per message

If your input data file is from a Mac machine, please be sure to check this box