Exon annotation on UCSC latest freeze
* entries are required
BLAT-based exon annotation (BLAT created by Jim Kent, 2002)
1. *Please copy & paste in the cDNA sequence data (may contain all the cDNA sequence in FASTA format):
or upload data file
2. Please select the chromosome the genes are mapping to:
* Chromosome 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y of latest version of UCSC freeze (be sure to select the correct one)
3. Adjustable parameters for BLAT-based annotation:
4. Choice of outputs:
Annotation Genbank format data or Genbank format features
viewable in Vector NTI or Artemis
Feature table ready for database in tab-delimited format
Original BLAT output
Data for the "custom track" of Genome Browser Name the track as
Original full-length Genbank format data (with sequence body)
Original gbheader
Give WARNING if more than bp cDNA not covered by exon analysis
5. Please specify the email address where the final annotated sequence can be delivered:
Email address *
choice of output in gzip compressed format: yes, zip it no, original data please
Your email box accepts message size limit of 1 MB 2 MB 4 MB 6 MB per message
If your input data file is from a Mac machine, please be sure to check this box
