Screening primers for repeat sequence

Report primers located in repeats

1. Please give the primer sequence file (batch sequences in FASTA format):

    Repeat Database Choice

2. Filter paramters:

3. Output name you prefer (The file name should not contain white space. It should be only composed of numbers, letters a to Z, "-" and "_" .)

4. The list of primers located in repeats will be delivered to:

Email address

Your email box accepts message size limit of  per message

choice of output in gzip compressed format:

If your input data file is from a Mac machine, please be sure to check this box

 

[data from RepBase update 7.10 November 11, 2002 including humapp.ref, humrep.ref, humsub.ref, mamapp.ref, mamrep.ref, mamsub.ref, pseapp.ref, pseudo.ref, simple.ref, vrtapp.ref, vrtrep.ref, plus NCBI BLAST Alu database (5/25/2000 ftp://ftp.ncbi.nih.gov/blast/db/alu.n.Z)] For "Human repeat"

[data from repeats reported by * NCBI BLAST Alu database (5/25/2000 ftp://ftp.ncbi.nih.gov/blast/db/alu.n.Z), plus all data from RepBase update 7.10 November 11, 2002 ] For "All repeat".